Medical Expense Deduction Japan 2026: Tax Back Over 100,000 Yen

Checked on 23 September 2026 against the National Tax Agency’s Tax Answer pages (No.1120, 1122, 1124, 1126, 1128, 1129, 1100, 1935, 2030, 2026, 2260 and 1410), its Q&A cases and its FY2026 tax guide for households, and Yokohama City’s FAQ on the medical expense deduction.

Knowing this, you can sort the clinic and pharmacy receipts in your wallet into “claim this year” or “not worth it” before you throw them away. You will also know whether last year’s or the year before’s costs can still be claimed.

Three trips to the paediatrician when your child had a fever. A run of dental appointments. One short hospital stay of your own. In December you add up the bag of receipts and it comes to just over 120,000 yen. You ask a Japanese colleague whether foreigners can claim the medical expense deduction. “Over 100,000 yen, I think you can.” Then you ask about the operation you paid for your mother back home, and the conversation stops. Most Japanese people’s families live in Japan.

Quick reference: the threshold by salary, and the deadline by year

These two tables answer “from how much can I claim this year?” and “how far back can I still claim?” The reasons are explained in the sections below.

Table 1: The threshold by salary (2026 tax year, salary income only)

Annual salary	Income (salary minus the salary income deduction)	Threshold (5% of income; 100,000 yen once income reaches 2 million)	Deduction if you paid 120,000 yen in medical costs
1.0 million yen	260,000 yen	13,000 yen	107,000 yen
1.5 million yen	760,000 yen	38,000 yen	82,000 yen
2.0 million yen	1.26 million yen	63,000 yen	57,000 yen
2.5 million yen	about 1.67 million yen	about 83,500 yen	about 36,500 yen
2.8 million yen	about 1.88 million yen	about 94,000 yen	about 26,000 yen
About 2.97 million yen or more	2 million yen or more	100,000 yen	20,000 yen

The salary income deduction is the amount in National Tax Agency Tax Answer No.1410 for 2026 and 2027. Above a salary of 2.2 million yen the agency uses a separate table to find income, so the 2.5 million and 2.8 million rows are calculated with the quick formula. If you have other income, such as a side job, your threshold changes. The deduction figures assume nothing is paid back to you by insurance. The “deduction” is the amount taken off your income, not the tax you get back. If your salary is around 1 million yen and no income tax was withheld, you get no income tax back (Tax Answer No.2030).

Table 2: The refund-filing window by the year you paid (as of October 2026)

Year you paid the costs	When you can file	Can you import medical expense notices from Mynaportal?
2021	1 Jan 2022 to 31 Dec 2026 (this is the last year)	Only costs paid from September
2022	1 Jan 2023 to 31 Dec 2027	Yes
2023	1 Jan 2024 to 31 Dec 2028	Yes
2024	1 Jan 2025 to 31 Dec 2029	Yes
2025	1 Jan 2026 to 31 Dec 2030	Yes
2026 (this year)	1 Jan 2027 to 31 Dec 2031	Yes

The windows follow Tax Answer No.2030: five years from 1 January of the year after the payment. You need income tax withheld from your pay that year, and medical costs above that year’s threshold. Government offices close over the New Year, so file the 2021 claim well before the end of December.

What is the medical expense deduction in Japan, and can foreigners use it?

It is an income deduction. When the medical costs you paid for yourself and your family in a year go over a set amount, the excess is taken off your income. Lower income means lower income tax and lower resident tax.

There is no nationality condition. What matters is whether you live in Japan. The National Tax Agency says non-residents, people with no address in Japan, can use only three income deductions: casualty losses, donations and the basic deduction. The medical expense deduction is not one of them.

In the year you arrive or leave, count only what you paid while living here. For people who return from working overseas, the National Tax Agency says the deduction is calculated on amounts paid during the period of residence. The same logic applies to the year you moved to Japan.

Employees claim it themselves with a tax return. The National Tax Agency even publishes a filled-in sample return for “a person who received the year-end adjustment and claims the medical expense deduction”.

How much do medical expenses need to be? 100,000 yen, or 5% of income

The National Tax Agency’s formula is:

(Medical costs paid in the year − amounts reimbursed) − 100,000 yen = your deduction (maximum 2 million yen)

For example, if you paid 250,000 yen and nothing was reimbursed: 250,000 − 0 − 100,000 = 150,000 yen deduction.

If your total income for the year is under 2 million yen, the 100,000 yen becomes 5% of your income. The lower your income, the sooner the deduction starts.

“Income” here is not your salary. For someone with only a salary, it is employment income: salary minus the employment income deduction, shown on your withholding slip (gensen choshuhyo) as the amount after the employment income deduction. For 2026 the minimum employment income deduction is 740,000 yen. So a part-timer earning 1.5 million yen has income of 760,000 yen, and 5% of that is 38,000 yen. Anything above 38,000 yen in medical costs counts.

For 2026, a salary of about 2.97 million yen gives an income of exactly 2 million yen. If you earn less than that, work the numbers out even if your costs are under 100,000 yen.

What counts is the date you paid, not the date you were treated. Costs paid between 1 January and 31 December belong to that year, and unpaid bills belong to the year you actually pay them. If treatment runs across two years, split it by what you paid in each year.

How much tax will I get back?

You do not get the medical bill back. You get back the tax on the deduction. Yokohama City puts it plainly: this is not a system that refunds the medical costs you paid.

Income tax rate (taxable income)	Income tax per 100,000 yen of deduction	Resident tax
5% (under 1.95 million yen)	about 5,100 yen	about 10,000 yen
10% (1.95 to under 3.3 million yen)	about 10,200 yen	about 10,000 yen
20% (3.3 to under 6.95 million yen)	about 20,400 yen	about 10,000 yen

The income tax figures include the 2.1% reconstruction surtax for 2026. Resident tax on income is 10%, so a tenth of the deduction comes off next year’s resident tax bill.

Is it worth it if you are only just over 100,000 yen? At 110,000 yen the deduction is 10,000 yen. At a 5% rate that is about 510 yen of income tax (10,000 × 5.105%, including the reconstruction surtax) and 1,000 yen of resident tax (10,000 × 10%). Small. But if you are filing anyway, say for a refund after leaving a job mid-year or for furusato nozei donations, adding your medical costs to the same return takes little extra effort.

Some people get nothing back. Income tax is refunded only if tax was withheld from your pay; if the withheld amount on your slip is zero, there is no refund. And if you pay no resident tax on income, Yokohama City says the deduction has no effect and you need not declare it.

Do I subtract the high-cost medical expense benefit and insurance payouts?

Yes. Anything paid to you to cover medical costs is subtracted from what you paid. The National Tax Agency’s examples:

• From health insurance: the high-cost medical expense benefit, family medical benefits, and the childbirth lump-sum grant
• Hospitalisation benefits and similar payouts from life or medical insurance
• Compensation paid to cover medical costs, for example after a traffic accident

Say surgery and a hospital stay cost you 300,000 yen at the counter. If you are under 70 and in band C, treatment from August 2026 caps your share at 92,940 yen (the health ministry’s worked example), so the 207,060 yen difference comes back through the high-cost medical expense benefit. Only the remaining 92,940 yen goes into your medical expense deduction, along with the year’s other clinic and pharmacy costs.

An insurance payout for a hospital stay is subtracted only up to the cost of that stay. If the payout is larger, you do not subtract the rest from other medical costs. Maternity allowance paid while you are off work is not for medical costs, so it is not subtracted.

If the high-cost benefit for a December stay has not been decided when you file, subtract an estimate. If the final amount differs, correct it later: an amended return if you got too much back, or a request for correction if you got too little.

	High-cost medical expense benefit	Medical expense deduction
Period counted	One month	One year (January to December)
What you get back	Medical costs above the monthly cap	Tax (income tax and resident tax)
Where to claim	City office (National Health Insurance), or Kyokai Kenpo or your health insurance society	Tax office (tax return)
Deadline	Two years from the 1st of the month after treatment	Five years from 1 January of the next year (refund return)
Hospital meals	Not covered	Covered

What counts as a medical expense in Japan, and what does not?

The test is whether it was for treatment. Cold medicine you bought at a pharmacy because you had a cold counts. Vitamins, supplements and vaccinations for prevention or general health do not.

The National Tax Agency’s answers on the common grey areas:

• Health check-ups: not covered, unless the check-up finds a serious illness and treatment follows
• Eyes: ordinary glasses for short or long sight are not covered; LASIK surgery is (health insurance does not cover ordinary glasses either; the exception for children’s treatment glasses is in our guide to eye doctors and contact lenses)
• Teeth: treatment with gold or porcelain is covered; orthodontics for appearance is not (which dental work is insured and which is self-pay is in the dentist cost guide)
• Hospital stays: hospital meals are covered; takeaway food, pyjamas, toiletries and thank-you gifts to doctors or nurses are not
• Pregnancy and birth: check-ups, tests, travel to appointments and the hospital stay for the birth are covered; travel home to give birth near family is not

Train and bus fares rarely come with receipts. The National Tax Agency asks you to note the date and amount, for example in a household account book. A note on your phone does the job.

Treatment abroad counts too. The National Tax Agency says medical costs paid to a doctor in another country qualify. If you paid in a foreign currency, convert it at the TTM rate (the midpoint between the bank’s buying and selling rates) on the day you paid.

Can I include my family’s medical costs, even family living abroad?

You can include family. The deduction covers medical costs you paid for yourself or for a spouse or other relative “who shares your household budget” (seikei wo itsu ni suru). It does not matter whether they are your tax dependants. Relatives means blood relatives within six degrees, your spouse, and in-laws within three degrees.

Sharing a household budget does not mean living in the same home. Citing its basic circular, the National Tax Agency explains that relatives who live apart share your budget if you regularly send them living costs, school fees or medical costs. Its own example is a child who supports a mother living alone in their home town.

What about family in your home country? We could not find a National Tax Agency page that names medical costs for family living abroad. Two official explanations point the way:

• Sharing a household budget is judged by whether you regularly send living costs, not by living together
• Medical costs paid to a doctor abroad qualify for the deduction

If you regularly support a relative back home and you paid for their treatment, your case follows both explanations. But the deduction belongs to whoever actually paid. Treatment your family paid for with their own money is not yours to claim. Keep the record of paying the hospital, or of sending money for the treatment, together with the receipts and your regular remittance records. If you are unsure whether you qualify, ask the tax office before you file.

Claiming family abroad as tax dependants is a separate process, with its own relationship and remittance documents. That is covered in claiming overseas family as dependents.

The same rule applies to couples who both work: each person’s medical costs go on the return of whoever actually paid them.

Self-medication tax system or the normal deduction: which is better?

The self-medication tax system is a special version of the medical expense deduction. If you spend more than 12,000 yen in a year on certain over-the-counter medicines (switch OTC drugs and similar), you can deduct the excess, up to 88,000 yen. Qualifying products are marked as such on the receipt.

You must yourself have done a qualifying health activity that year, such as a health check-up or a vaccination. A workplace check-up or a flu jab counts. A vaccination your family member had does not count for you.

You can use only one: the normal deduction or the self-medication system. Once you have chosen and filed, you cannot switch later.

Work out both and take the larger. Say your income is 2 million yen or more, and you paid 80,000 yen at clinics and 30,000 yen on qualifying pharmacy medicines. The normal deduction is 110,000 − 100,000 = 10,000 yen. The self-medication deduction is 30,000 − 12,000 = 18,000 yen, so self-medication wins. Once your medical costs after reimbursements pass 188,000 yen, the normal deduction is always larger, because the self-medication deduction stops at 88,000 yen (188,000 − 100,000 = 88,000; NTA No.1129, in Japanese).

How to claim the medical expense deduction: the statement and the tax return

Your employer did the year-end tax adjustment, so you assume your hospital bills were settled along with it. In your country, the employer may take care of all your tax paperwork. In Japan, the year-end adjustment does not cover the medical expense deduction; you claim it yourself with a tax return. If you do nothing, the refund never comes.

You do not attach the receipts themselves. You attach a “statement of medical expenses” (iryohi kojo no meisaisho).

1. Collect the receipts and total them by person and by hospital or pharmacy. With many receipts, the National Tax Agency’s Excel medical expense form can be loaded into its online return tool
2. If your health insurer sends you a medical cost notice (iryohi no oshirase), attaching it simplifies the statement
3. Make the return and statement in the National Tax Agency’s online return tool (kakutei shinkokusho to sakusei corner). Linking it to Mynaportal pulls in medical cost data for payments from September 2021
4. Add what the data does not include by hand: treatment abroad, travel to appointments, and pharmacy medicines
5. Submit by e-Tax, by post or at the tax office. Refunds are paid into a Japanese bank account

Bring your withholding slip, the medical receipts (or the insurer’s notice), any high-cost benefit or insurance payout notices, and your bank details for the refund. For ID, your My Number Card alone is enough; without it, you need a document showing your number, such as the notification card, plus photo ID such as your passport.

You can file from 1 January of the following year. A return that only claims a refund does not have to wait for the 16 February to 15 March filing season. If you must file anyway, for example with side income over 200,000 yen, the deadline is 15 March. The whole process is in the guide to filing a tax return in Japan.

Keep the receipts after you file. The National Tax Agency may ask to see them for up to five years from the filing deadline to check the statement.

Can I claim medical expenses from past years? Up to five years back

Yes. A refund return can be filed for five years from 1 January of the following year. During 2026 you can still file for 2021, and the last day for 2021 is 31 December 2026.

Two conditions: income tax was withheld from your pay that year, and that year’s costs went over that year’s 100,000 yen or 5% threshold. Each year is calculated separately, so you cannot add five years together into one claim.

Older years take more work. The medical cost data you can import through Mynaportal starts with payments from September 2021. Before that, use your own receipts or your insurer’s medical cost notices.

If you already filed a return for that year, you do not file again; you submit a request for correction (kosei no seikyu). After a refund return, the limit is five years from the day you filed it. If you were required to file, it is in principle five years from the filing deadline.

Does the medical expense deduction lower resident tax too?

Yes. Resident tax uses the same formula, and a tenth of the deduction comes off the next fiscal year’s resident tax on income. Resident tax is based on the previous year’s income, so medical costs you paid in 2026 lower your resident tax for fiscal 2027.

One filing covers both. Yokohama City says that filing an income tax return counts as filing your resident tax declaration.

Some people pay resident tax but have no income tax withheld. They can also declare the deduction at the tax desk of their city or ward office with a resident tax declaration and the statement of medical expenses. In Yokohama that is the ward office tax section. How resident tax works is explained in the resident tax guide.

If you claim a past year, ask your city’s tax section how that year’s resident tax will be adjusted.

What if I make a mistake?

You included something that does not count, or forgot to subtract the high-cost benefit. If you got too much back, file an amended return and pay the difference. According to the National Tax Agency, if you file the amended return yourself before the tax office notifies you of an audit, there is no understatement penalty. After a notice it is 5%, after an audit 10%, plus late-payment interest for the days that passed.

If you left something out and got too little back, a request for correction gets you the difference.

Costs without a receipt cannot be claimed. Yokohama City says the payment cannot be confirmed without one. Ask the clinic or pharmacy to reissue it, or use your insurer’s medical cost notice as proof if the payment is listed there.

What if I cannot pay the hospital bill now?

The deduction pays out only after you file the following year. It will not help with this month’s bill.

• For a hospital stay or surgery, use the high-cost medical expense benefit first. With a My Number health card, the counter stops charging at your monthly cap
• On Kyokai Kenpo, the high-cost medical expense loan lends 80% of the expected refund in advance, interest-free
• Ask the hospital cashier about paying in instalments. The free or low-cost medical care scheme for people in hardship is in the guide to seeing a doctor in Japan

Instalments count in the year each one is paid. If payments cross into a new year, split them by year.

Which one are you?

1. Your family’s costs add up to more than 100,000 yen (or 5% of income under 2 million yen) — make the statement in the online tool and file a refund return from January. Today: put every family member’s receipts in one envelope.
2. You were in hospital and received the high-cost benefit — check whether you are still over the threshold after subtracting it. Today: find the benefit decision notice and note the amount.
3. You paid for treatment for family back home — gather proof that you paid and your regular remittance records, and ask the tax office whether you qualify. Today: save your remittance app history by year.
4. You had high costs last year or earlier and never claimed — within five years, a refund return gets it back. Today: check that year’s withholding slip for a withheld tax amount above zero.
5. You pay neither income tax nor resident tax — filing brings nothing back. Today: check your high-cost medical expense band instead.

FAQ

Q. Can foreigners claim the medical expense deduction in Japan?

Yes. There is no nationality condition; residents with an address in Japan can use it. Non-residents with no address in Japan cannot.

Q. How much do medical expenses have to be before I can claim?

The deduction is what is left after subtracting reimbursements and then 100,000 yen from the medical costs you paid in the year. If your income that year is under 2 million yen, subtract 5% of your income instead of 100,000 yen.

Q. How much tax do I get back?

The deduction times your income tax rate comes back as income tax, and next year’s resident tax falls by 10% of the deduction. For every 100,000 yen of deduction at a 5% rate, that is about 5,100 yen of income tax (5.105% including the reconstruction surtax) and 10,000 yen of resident tax. The medical costs themselves are not refunded.

Q. Can I include medical costs for family living abroad?

The National Tax Agency says relatives living apart share your household budget if you regularly send them living costs, and that medical costs paid to doctors abroad qualify. Only the person who actually paid can claim, so keep proof of payment and your remittance records, and ask the tax office whether your case qualifies.

Q. What do I do with the high-cost medical expense benefit?

Subtract it from the medical costs you paid. If the amount is not decided when you file, subtract an estimate and correct it later with an amended return or a request for correction.

Q. Can I claim the medical expense deduction for past years?

A refund return can be filed for five years from 1 January of the following year. During 2026 you can file back to 2021, provided income tax was withheld that year.

Summary

The medical expense deduction lowers income tax and resident tax when the medical costs you paid in a year go over 100,000 yen, or 5% of income under 2 million yen. Foreign residents use it exactly as Japanese residents do. Subtract the high-cost benefit and insurance payouts first. What comes back is tax on the deduction, not the bill itself.

Family costs can be added if the relative shares your household budget and you paid. For family back home, keep the records and check with the tax office that your case fits the official explanations. Employees file on their own, from 1 January for up to five years, and keep receipts for five years.

Official sources: National Tax Agency, Tax Answer No.1120, medical expense deduction (Japanese) / No.1122, qualifying medical expenses / No.1122 Q&A, including treatment paid abroad / No.1129, self-medication tax system / No.2030, refund returns / NTA Q&A case, medical costs for a parent living apart / NTA household tax guide, paying medical expenses / Yokohama City, medical expense deduction FAQ. All in Japanese, checked on 23 September 2026. If you are unsure whether you qualify, ask the tax office before you file.

Related reading

• If you are filing for medical costs and want the deadlines, documents and what happens when you leave Japan → Kakutei Shinkoku 2026: Who Must File a Tax Return in Japan
• If you want to know the most a hospital stay or operation can cost you in a month → High Cost Medical Expense Benefit Japan 2026: Caps From 36,900 Yen
• If you support family back home and want to claim them as tax dependants too → Claiming Overseas Family as Dependents on Your Japanese Tax 2026

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